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The Southwestern Atlantic Ocean (SWA), is considered one of the most productive areas of the world, with a high abundance of ecologically and economically important fish species. Yet, the biological responses of this complex region to climate variability are still uncertain. Here, using 24 years of satellite‐derived Chl‐a data, we classified the SWA into 9 spatially coherent regions based on the temporal variability of Chl‐a concentration, as revealed by SOM (Self‐Organizing Maps) analysis. These biogeographical regions were the basis of a regional trend analysis in phytoplankton biomass, phenological indices, and environmental forcing variations. A general positive trend in phytoplankton concentration was observed, especially in the highly productive areas of the northern shelf‐break, where phytoplankton biomass has increased at a rate of up to 0.42 ± 0.04 mg m⁻³per decade. Significant positive trends in sea surface temperature were observed in 4 of the 9 regions (0.08–0.26 °C decade⁻¹) and shoaling of the mixing layer depth in 5 of the 9 regions (−1.50 to −3.36 m decade⁻¹). In addition to the generally positive trend in Chl‐a, the most conspicuous change in the phytoplankton temporal patterns in the SWA is a delay in the autumn bloom (between 15 ± 3 and 24 ± 6 days decade⁻¹, depending on the region). The observed variations in phytoplankton phenology could be attributed to climate‐induced ocean warming and extended stratification period. Our results provided further evidence of the impact of climate change on these highly productive waters.